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Olpidium, The Key to the Origin of Terrestrial Fungi
… viruses (e.g., Lettuce big-vein associated virus LBVaV; genus Varicosavirus ) which may severely reduce crop yields. … many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of fungi by James et al. and … remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium , my colleagues …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has …
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Four Researchers Join JGI User Executive Committee
… Bik is a recipient of the Community Science Program (CSP) New Investigator call. Through membership in the UEC, … decade in gene regulatory network projects supported by the CSP, and as part of microbiome research involving the … His current research focuses on the evolution, ecology, genomics and function of microbes and microbiomes, …
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Frederik Schulz
… sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to find novel functions that … binning of a giant virus. mSystems. 5 (3) Schulz et al. (2018) Hidden diversity of soil giant viruses. Nature …
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You Can Move, But You Can’t Hide
… cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, scientists can better understand ecosystem-wide processes. Summary geNomad is an annotation and …
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Making a Lichen Together
… communication and cooperation. Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two … and environments. The long-term investments in both the genomics and gardens are helping these shrubby grasses …
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Improving the Cacao Genome and Phytozome
… Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Workforce Development & Education Outreach
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Rex Malmstrom
… Applications group to operate a similar single-cell genomics pipeline that provides JGI users access to the … His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in situ functional … BONCAT-FACS.  Nature Comm 10(1) 1-10 Schulz, F. et al. 2018. Hidden diversity of soil giant viruses. Nature Comm . …
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Massie S. Ballon
… media manager for over a decade. Her portfolio spans a wide range of topics beyond translating science, including …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … has begun to the June dedication event of the Integrative Genomics Building—the new home of the JGI and KBase in the … (pages 47-49). “Our hope is to circulate this document widely within the Biosciences Area and among our Berkeley …
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