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JGI announces 2023 CSP Functional Genomics awardees
… year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
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Graduate Students Get Thesis Research Opportunity at the JGI
… the opportunity to pursue part of their thesis research at one of the DOE national laboratories or national user … between 3-12 consecutive months. Their proposed research projects address scientific challenges central to Office of … and this is a remarkable opportunity to launch a pilot project and begin the work of understanding how engineered …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to … of the proposals. Upon approval from JGI reviewers, the DOE project managers review the proposals. The proposer of …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale … range of environments. A similar proposal focused on diatom genomes from  Thomas Mock of the University of East Anglia …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome Portal .) The team … by continuing to access the JGI’s  Integrated Microbial Genomes and Microbiomes (IMG/M) system. For example, the …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant …
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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … decomposition. She’s also participated in the 1000 Fungal Genomes Project and has an interest in cross-disciplinary …
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Boosting Small Molecule Production in Super “Soup”
… from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: … smoothly. As reported August 26, 2021, in Nature Communications , researchers led by Hal Alper at The University of … Michael Jewett of Northwestern University describe a two-pronged approach that starts with engineered yeast cells but …
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JGI announces final round of 2022 Functional Genomics awardees
… year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and …
Learn more
Taking Stock of the Known and Unknown Microbial Space
… technologies have led to an abundance of microbial genomes becoming available to the global research … of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … a deep dive into over 1.8 million bacterial and archaeal genomes to see how much of their diversity we've actually …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … also carries out custom preparative work for difficult user projects, including those that require fluorescence …
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