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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her … tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner …
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Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … insights. The way that plants process nutrients has a rich back story — they rely on enzymes that have been evolving … and Systems Biology Division of Lawrence Berkeley National Laboratory (Berkeley Lab). He completed this work with …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis … Trust Sanger Institute, UK and Lawrence Berkeley National Lab … Bowers et al. 2024. scMicrobe PTA: Near Complete …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in … Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome Data Collaborative (NMDC). … Emiley … Scripps Institution of Oceanography … Vyshenska D, et al. 2023. A standardized quantitative analysis strategy for …
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High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Structurally, this protein is …
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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes … . Published  May 2024 in  Nature Genetics by an international research consortium led by the University of …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at … Communications paper that builds off their early collaborations that could help crop breeders and researchers … and publishing the paper. “I would say there was a lot back-and-forth, y’know, over the decade that I worked with …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based … JGI is partnering with NVIDIA and Oak Ridge National Laboratory (ORNL) to make sure our computational workload … per team. Participants will be expected to have some experience with OpenACC or CUDA – links to training …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … insights into the dynamics of gene expression as it grows back vigorously year after year (perenniality). The Impact … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and collaborators across Europe …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … an efficient switchgrass transformation pipeline and, in collaboration with industrial partners, generated hundreds of … Science, Department of Plant Biology … Scarlett, et. al. 2023 Multiple origins, one evolutionary trajectory: gradual …
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