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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … the University of Minnesota is interested in learning more about the fungal endophytes of soybean and how they deter … this approach would also allow researchers to learn more about what is and is not modifiable in crops, which can help …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … author Avinash Sreedasyam, a HudsonAlpha senior scientist, about the project. The story is reposted here in modified … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, …
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An Integrated Dataset to Understand Ecosystem Interaction
… time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as well as the soil surrounding … wildlife habitats and water-quality regulation. Focusing on the rhizosphere and interactions between the trees, … to conduct a wide variety of analyses that contribute to a sustainable bioeconomy. Summary The 27 samples studied by …
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Biotech Partners Summer Intern Co-Authors NAR Paper
Kaushal Sharma, one of five Antioch High School rising juniors … Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s contributions as … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … enzymes in the soil and who made them. Based on data reported in the April issue of Soil Biology and Biochemistry … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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Access to Rock Star Scientists
… so nice and helpful.”     Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to talking about their work. It’s fun to be around people who are generous with their time and like nerding out about the big stuff, well, the little stuff! People hold …
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A Complex Confection Decoded: Sugarcane Reference Genome
… the location of genes that provide resistance to the brown rust disease that can devastate a crop. The Impact In … foundational genetic information that crop breeders can use to improve sugarcane varieties and advance a sustainable … for the sugarcane cultivar R570 has been generated and  reported in the journal  Nature . The work led by …
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Computationally Classifying Fungal Lifestyles
… and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the data provided. In this proof of concept test, the team reported that the algorithm was over 95% successful at …
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director Exceptional Achievement Award …
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Training the Next Generation of Talent
Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … of their internships, and are summarizing their data in a report. “QSB is grateful to the JGI-UC Merced Summer …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
CSP  New Investigator call for proposals.  Tips: Contact us with your questions ([email protected]) … your proposal idea with JGI staff to clarify key points about JGI’s capabilities, technical feasibility, and … by DOE. Email engage@kbase.us if you have questions about how KBase can support your CSP data. The proposal call …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… amount of biomass which could then be converted into sustainable biofuels . For its importance to the DOE mission, … productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by … At the 2021 JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving …
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