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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to … genes. The data from that study is now used across California State University campuses for biotechnology education …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
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Neha Varghese
… Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science and projects through implementation of advanced …
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Progress Reports: 2002–2020
… pdfs of previous Progress Reports from the Joint Genome Institute.  …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual … by short final presentations attended by more than 75 JGI staff. According to Axel Visel and Zhong Wang, founders … of this internship program, this was the largest turnout for the final presentations to date.  This summer internship …
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IMA genome-F18
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium … Lab), Woyke currently serves as the interim deputy for JGI User Programs. Earlier this year, she was elected to the … as Adjunct Scientist at the Bigelow Laboratory for Ocean Sciences and as Associate Adjunct Professor at the …
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Atif Shahab
… Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This … University of New South Wales, Australia; MS in Computer Science, University of New South Wales, Australia …
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread …
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The Mobilome in the Mire
…   For years, researchers have known that many datasets miss a key part of microbial genomes: the mobile genetic elements, or MGEs, that can move … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series …
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Steven Wilson
… Systems Engineering Group lead.   The group is responsible for developing and supporting applications that span the lifecycle of activities at JGI - proposal submission and review, project and work order … align and reach the associated goals. Mr. Wilson joined the JGI in 2002.  A fter supporting the sequencing core at …
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