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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… climate. Most methane is produced in environments without oxygen through a process called methanogenesis. Methanogenic microorganisms therefore … Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety …
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Georg Rath
… he has been working on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, Vienna) and the High Field … by his team is unbureaucratic and driven by code, without putting humans in the loop. He is a big proponent of …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North … local dry-cleaner. Researchers  identified two bacteria,  Dehalococcoides mccartyi and  Dehalobacter restrictus,  that … been similarly invested in environmental management, contributing to bioremediation efforts for decades. Identifying …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… are on the order of 100 times the size of what has typically been associated with viruses, while the genomes of … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … reconstructed from environmental sequences is still challenging and even with this study we are likely to just …
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Evolution of a Fungal Gene Expression Regulator
… can lead to changes in protein structures and functions, but the DNA bases themselves can also be modified. The … least one reference genome for every family of fungi, the 1000 Fungal Genomes initiative of the U.S. Department of … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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A Community Resource for Secondary Metabolite Researchers
… public database for the research community. With more than 13 million BGCs in the catalog at the time of publication, … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … with each other, share annotations and collaborate on solutions.  Compared with past efforts at the JGI, like …
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Integrating Experimentation with Data
… $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular Sciences … Laboratory (EMSL) at their joint meeting! “Empowering Automated Laboratories: Integrating Experimentation with … Biodesign and Synthetic Biology AI/ML-enabled Laboratory Automation, Data Integration and Modeling This three-day …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of … RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005. Otani H, Udwary DW, Mouncey NJ. …
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Exploring and Thinking Critically about Scientific Problems with JGI Interns
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment … evolve.  Determining the genetic codes of plants is often challenging because in many plants chromosomes are present in … the set of chromosomes from each ancestor is called a subgenome. Session and Rokhsar, building on work …
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be … scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — …
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Party in the Rhizosphere
… plants secrete through their roots, creating a lively zone called the rhizosphere. In this episode, biologist Jennifer …
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