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The Chlamydomonas genome project: a decade on
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Genomic Standards Consortium Projects
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A Complex Confection Decoded: Sugarcane Reference Genome
… sugarcane  genome , the JGI provides foundational genetic information that crop breeders can use to improve sugarcane … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The work was partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of …
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Environmental Genomics Group
… Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to identify and characterize genomic information from uncultivated microbes and viruses. We … of hard-to-culture microorganisms. This process enables our users to explore the genetic makeup of microbial …
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Effects of Polar Light Cycle on Microbial Food Web
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (Berkeley Lab). The work was enabled by the JGI’s Community Science Program. For most months each year, Ace Lake is covered in … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at …
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2024 Progress Report
… Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead … Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … and professional expertise to support the global research community in studies of complex biological and environmental …
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A call for standardized classification of metagenome projects
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Virus-Microbe Interactions of Mud Island Mangroves
… the DOE Office of Science Graduate Student Research (SCGSR) program , which awards graduate students the opportunity to … at one of the DOE national laboratories or national user facilities. Baker had worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s …
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Fishing for Novel Cellulose Degraders
… hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a …
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A User-Centered Approach to Accessing JGI Data
… plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … across the files that are submitted by each scientific program,” he said. “If each kingdom submits the same … allows users to find files by searching file metadata (info describing the files) We are currently limited to: …
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iPHoP: A Matchmaker for Phages and their Hosts
… prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … will strengthen future virus-host predictions. This information could open the door to improving crop yields and …
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