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Two related families of metal transferases, ZNG1 and ZNG2, are involved in acclimation to poor Zn nutrition in Arabidopsis
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Understanding Wildfire Recovery, Starting in Soil
… at the soil microbes present a year after a wildfire. The Science After a wildfire burns, recovery begins at the … bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees to grow. However, … The Impact Healthy forests store carbon, filter water, and support all kinds of plants and animals, but with climate …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the US Department of …
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Work With the JGI! Tips for a Winning CSP Proposal
… The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and it’s open … times a year. A few proposal calls have deadlines coming up – in January, March, and later on in the spring. In this …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to the … under FP00005685. In addition, M.D. acknowledges funding from a National Defense Science and Engineering Graduate …
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Toward More Efficient Artificial Photosynthesis
… and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts are the factories in plant cells. Using photosynthesis, they take raw materials including … at Lawrence Berkeley National Laboratory (Berkeley Lab). Supporting the Erb lab through the CSP Functional Genomics …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a … encoded in the genome sequence is part of the integrative science mission of the U.S. Department of Energy (DOE) Joint … Ronan O’Malley , who leads the Sequencing Technologies Group. In an article published November 25, 2021 in Nature …
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Mining Metagenomes for Cas Proteins
… at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature … Repeats (CRISPR) associated proteins that can target single-stranded DNA (ssDNA). The discovery was made possible … by a team led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … was over 95% successful at classifying the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle …
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Cataloging the Microbes that Manage the Health of River Systems
… on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the continental United States. … that might be added to the water along the way, impacting its quality and in turn affecting environmental and …
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Tracing the Evolution of Shiitake Mushrooms
… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same … from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from … mushrooms are white rot fungi, belonging to an elite group of decomposers that can break down all of wood’s …
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A Model System for Perennial Grasses
… hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study drought tolerance in perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two … as drought and floods. The U.S. Department of Energy (DOE) supports research programs for developing methods for …
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