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Back in the Lab: the 2023 Summer Intern Experience
… This summer marked the first fully in-person internship experience in several years for students and researchers alike at the JGI. With the past …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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IMA genome-F18
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their … Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel applications. The Impact Sphagnum’s impact …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … Q:  How would people find out about the NEON Sample Protocols? A:  Go to the  NEON website and click on the Data …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read … Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input library creation protocols for PacBio? A(nswer):  Regular PacBio typically … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons … According to Lawrence, this summer project aligned with his computational background and interests nicely. And although … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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The Case for Conservation
… How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science … advances in sequencing technologies applied to the effort. The Impact Found on all continents, including … in a JGI podcast episode about the work, the effort to fully sequence the fire moss genomes ran the gamut of …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics … Nobel Laureate Jennifer Doudna of the University of California, Berkeley and Berkeley Lab, who discussed the … by TE activity. Her lab has leveraged bioinformatics in computational analysis to identify and characterize TEs, …
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role … Together, these teams provide analysis support and R&D for production and user science. He received his Ph.D. from … carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. … the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … from having a much more complicated ligand to wrestle with computationally and pyramidalization is that we need good …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … said Sharon Greenblum, a co-first author on the paper and computational biologist at the JGI. “We had to work really …
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