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Olpidium, The Key to the Origin of Terrestrial Fungi
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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DAS Tool for Genome Reconstruction from Metagenomes
… Developing and validating an integrated approach to genome recovery from metagenomes. The Science Through the … The Impact Understanding how individual microbes interact with each other in a community, and characterizing their … more genomes from complex metagenomes than any of the single binning tools alone,” primarily because of its …
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JGI@25: Strengthening Soybean
… to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, in crop … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … with key partners, both Corteva and Bayer, and that’s going really well. And having the sequence data available for us …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing … 2025 issue of The Plant Cell. Auxenochlorella is an allodiploid hybrid of two species, similar to a mule, but that … algae. By creating a telomere-to-telomere nuclear genome assembly, researchers offer a gapless end-to-end sequence of …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … Citrus , appeals in other ways. It better tolerates cold, withstands pests, and, especially tantalizing, resists a … a UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors of the  recent …
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User Executive Committee Charter
… community and promotes communication and collaboration within the user community. UEC responsibilities include: … meeting such as duration, location, and cost; Communicate with the user community and bring forward user suggestions … investigator who has been an active user of the JGI at any time in the past two fiscal years is eligible for election …
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Eelgrass Proves to Be Much Younger Than We Thought
… that figure is likely closer to a mere 250,000 years — with many key colonization events in the Atlantic ocean … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the … a predictable rate, enabling researchers to use the genome assembly to calibrate their genetic clock.  Various …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … Find recordings and recaps of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari Patrinos , … which researchers can access multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years …
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Outreach Stories
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
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