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Simulation of Deepwater Horizon oil plume reveals substrate specialization within a complex community of hydrocarbon degraders
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and enables … BS in Electrical Engineering, University of New South Wales, Australia; MS …
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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The secondary metabolism collaboratory: a database and web discussion portal for secondary metabolite biosynthetic gene clusters
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or … a recent Nature Communications paper . The work was partly enabled by a JGI Community Science Program (CSP) proposal … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal …
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Massie S. Ballon
… Massie S. Ballon is the Communications and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help cultivate the … Massie Ballon is the JGI's Communications and Outreach …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of … and features to mine the GEM catalog. ( Watch this IMG webinar on Metagenome Bins to learn more.) One group mined …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over …
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The Genome of Polaromonas sp. Strain JS666: Insights into the Evolution of a Hydrocarbon- and Xenobiotic-Degrading Bacterium, and Features of Relevance to Biotechnology▿ †
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Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613
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Microbial community analysis of three hydrocarbon reservoir cores provides valuable insights for the assessment of reservoir souring potential
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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