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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … with resequencing of 1,984 cultivars and landraces, these data capture the diversity of this crop across geographic … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Chordate evolution and the three-phylum system
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint … ALISON: It sounds like it’s kind of like our endocrine system or hormones in a way too. Like in a maybe analogous … has been really crucial.  DAN: Yeah, yeah. The more data you generate, the more knowledge you can generate. So …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among the … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … has advanced drastically, aided by genome assembly from metagenomes. This is a critical step toward better …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … of their well-designed sampling and analysis of their data at the time. Following the publication of their paper …
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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw
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The Experiment Data Depot: A Web-Based Software Tool for Biological Experimental Data Storage, Sharing, and Visualization
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PR-PR: Cross-Platform Laboratory Automation System
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for … scientific contributions—including sequencing services and analysis—to participants. Over the past two years, Myco-Ed … and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … Research Center  Alexander Fleming. “This was a massive analysis of 1.3 billion proteins with massively parallel … the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  …
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Network Modeling of Complex Data Sets
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