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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… single host? Another wrinkle in the mystery is that viruses can affect their prey in different ways. They have the … cell. The team assembled 130 genomes from their sample — a small proportion of the sample’s billions of bacterial and … then allowed the team to ask, for the 34 hosts they found, how prevalent in the mat are their viruses? The abundance of …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… to the future of the institution. Their talks shed light on how the JGI was established, all that it has contributed, … inception as part of the Human Genome Project. He managed a small but important part of that program — looking at … small, easier to deal with and before they grow into big headaches.” He reminisced over the building of the …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … — providing a perspective on giant virus diversity, and how sequencing and bioinformatics have sped up the study of …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … million different species and evidence of their ancestors can be found in fossil records dating over a billion years … machine learning tools. “This was very exciting to see how Rhondene not only embraced the research question and …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… on enzymes that have been evolving for billions of years. However, these enzymes are often loosely understood, leaving … function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has progressed, organisms … across different species, each organism has a relatively small set of around 20 ATs. These ATs have maintained a …
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea
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Dan Rokhsar
… Dr. Rokhsar joined the faculty of University of California, Berkeley in 1989, as a member of the Physics Department and in 2002 he became a Professor of Genetics, Genomics and Development … Publications … Marthella Foskett Brown Chair, Computational Biology, UC Berkeley 2012 Cotton Biotechnology Award, National Cotton …
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A Sorghum Pangenome Opens More Doors to Discovery
… into drought tolerance, biomass production and more — however, a single reference genome shows only one slice of … view than ever before. With this information, researchers can link genetic variation more closely with gene function … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface … deep subsurface ecosystems. A team of researchers described how the viruses repeatedly attempted to infect and destroy … by incorporating short sequences from infecting viruses and phages. In these sequences are virus fragments called …
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