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… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade” by Clarivate Analytics. Those from the JGI whose publications rank in the top 1% by citations for field and … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …

… mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant … is Dr. Yi Zhai, and I’m currently working on the effect of plant root exudates in the rhizosphere and microbiome. …

… See below for a list of Frequently Asked Questions about our proposal submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific … supported, sample/capacity limits, and instructions.  Many of the submissions are done using web-based forms.   To view …

… early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … The Impact Iron cycling is thought to have played a key role in the development of life on Earth; the iron-oxide … of the roots of the tree of life on Earth, and their broad distribution suggests that iron-oxidizing habitats, …

… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … the microbes within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting microbial genes with …

… University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package … Selected Publications … Software …

… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … community-developed standards. GOLD also supports a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis Martin … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …

… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the continental United States. They …

… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … cell types, species and evolutionary history. DAP-seq’s broad applicability extends beyond plants. Currently, this … of evolution, suggesting it plays an important functional role in regulating gene expression. Focusing on these …

… the DOE JGI hosted 10 interns who came from a wide range of backgrounds. Many of them spent the summer crunching genomic data at a … worked with Zhong Wang while Karen Tolentino worked with Brachypodium researcher John Vogel. Other students hosted …

… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …