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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Ancient Algae Reveal Secrets of Plant Evolution
… Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By … showcases how early plants built upon an ancient genetic framework to thrive outside aquatic environments. The Impact … of how plants adapted to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a … in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … said Eugene Koonin, a senior investigator at the NCBI and one of the senior authors on the paper, of the uncovered …
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Understanding Wildfire Recovery, Starting in Soil
… The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for … and Coniochaeata lignaria , and both DNA and RNA viruses. One trait that stood out in both bacteria and fungi …
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Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach
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How Filamentous Fungi Sense Food
… Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the filamentous … break down the wide array of simple and complex components present in plant biomass. This is of interest for …
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Soil virus offers insight into maintaining microorganisms
… to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses … Lab). Using 5,000 images of crystalized samples cloned and synthesized by the JGI, scientists have begun the … on hidden components, including genes called auxiliary metabolic genes (AMGs) that have nothing to do with a virus’ …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the  2022 Highly Cited Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… they’d oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And … important cold-water communities of algae with warm-adapted ones, a trend that threatens to destabilize the delicate … organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary …
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Cataloging the Microbes that Manage the Health of River Systems
… States. They also provided multiple access points to the information. The team harnessed a community-science program to collect samples from across the country to standardize the process. They noted this may be the first … watershed scale models to manage river ecosystems. One application for the information is the development of …
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Multi‐omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring
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Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source
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