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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi
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University of California, Merced Internship Program
… Originally conceived as a UC Merced graduate student summer research experience at the JGI, the Genomics Internship Program soon expanded to include …   Revisit past projects …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths of the … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … in the biofuel and synthetic biology fields. In a living cell, triplets of nucleotides, or codons, dictate which …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been … microbial mats at Yellowstone offer researchers an analog for studying early Earth conditions. Additionally, … , the team used metagenome assemblies, transcriptomes and single amplified genomes from samples collected from several …
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Protocols
… Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: … iTag protocols: …
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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or … plants (endophytes). These include genes that degrade plant cell walls and break down plant sugars. The results also … of the key community participants and enabling future metagenomics studies.   …
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A roadmap for equitable reuse of public microbiome data
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy … of life on Earth, and led to the development of multicellular organisms. Not all bacterial lineages harnessed … Facility, and research scientist Frederik Schulz in Woyke’s Single Cells group had generated and analyzed single …
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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
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A Single Residue Switch Controls Isomer Selectivity in the Myxobacterial Isobonnadiene Synthase
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … processed 13,700 metabolomics samples With our users, 247 publications were published   …
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