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A Collaboration to Improve Plant Genome Annotations Across Species
… JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … and add additional gene function descriptions. This resource also helps in performing cross-species comparative … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with …
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JGI Scientists Pen Genome Watch Articles
… and they agreed, providing three articles for the journal with Du Toit as their editor. The partnership has … graduate students, postdocs, and staff scientists accepted our invitation to contribute such articles for our journal,” … As such, JGI is involved in a broad variety of genomics projects that relate to energy and the environment.” she …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … are highly capable of breaking down potential biomass sources in ways we are only just beginning to understand. A … of 410 rumen microbe genomes. The project relied upon resources from laboratories around the world, encompassing 54 …
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Webinar: MycoCosm Tutorial
… for genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial … us. 3.  Q: Can you use NCBI taxonomy information to search your interactive tree? A: Sure, if you enter ‘Mucorales’ in … genomes and those external genomes that enable JGI CSP projects – please first contact us at [email protected] …
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Ian Blaby
… oxidase for biophotovoltaic energy. Plant biotechnology journal . 14: 1, 22-28. 2016 Blaby et. al., Genome‐wide … and overlap with other stress transcriptomes. The Plant Journal . 84: 5, 974-988. 2015 Zones et. al., High-resolution …
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Defining a Pan-Genome for Antarctic Archaea
… of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are … metagenome data generated from samples collected at four Rauer lakes to assess population level genomic …
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A Mentor’s Perspective on Training the Next Generation
… the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… For bacteria, that salty, slightly stinky air is a rich source of the sulfur they need to grow and divide. Similar to … also produce hydrocarbons, the building blocks of many of our fuels and materials.  With an eye to harnessing these … and even larger hydrocarbons that are the staples of our chemical industry,” said Justin North, assistant …
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Dispatches From JGI Interns
… and graduate students to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns …
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What Happens Underground Influences Global Nutrient Cycles
… EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations … prominently among the eleven proposals selected with four focused on biofuels and bioproducts. For example, … land plants.  Within the biogeochemistry group, one of the four proposals selected is led by Eoin Brodie of Lawrence …
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Rex Malmstrom
… also carries out custom preparative work for difficult user projects, including those that require fluorescence … unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing the active fraction of … sweeps in natural bacterial populations. ISME Journal 10 (7), 1589 Kashtan, N et al. 2014. Single-cell …
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Leo Baumgart
… which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is … DSM12444 transcription factors." Microbiology Resource Announcements 14, no. 8 (2025): e00260-25. Cassol, …
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