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Fungal Friends or Foes in Plant Roots
… culture collection consisting of fungal species from natural Arabidopsis populations around Europe. The JGI …
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A One-Stop Shop for Analyzing Algal Genomes
… play key roles in global carbon cycling, are sources of natural products, and have potential as biofuel feedstocks. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… In short, the complexity of nutrients, constraints, etc. of natural environments shape specific genomic signatures that …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, … and efficiently harvest the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the … four strains of anaerobic fungi also, unexpectedly, secrete natural products . Those results showed that these fungi may …
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Effects of Polar Light Cycle on Microbial Food Web
… and offers new clues into a unique environment in the natural world. The Impact From the polar regions to the deep …
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DAS Tool for Genome Reconstruction from Metagenomes
… of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving … Interpretation (CAMI) Challenge, a competition launched in 2015 by a community initiative, with varying numbers of … lab in collaboration with the JGI), human microbiomes, natural oil seeps in Santa Barbara, Calif., and soil from …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… precise gene targeting in the genome in the November 2025 issue of The Plant Cell. Auxenochlorella is an … still able to reproduce asexually through mitosis. The alga naturally produces high amounts of oil and can grow with or … biotech applications. Engineers could manipulate these natural systems to tune gene activity without permanently …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the … Science Program proposal that Martin submitted in 2012. At that time, the field had surveyed many different … is one of the project leads. After starting with about 200 fungal genomes, in just a few years, he said, the 1000 …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of his lab, Abigayle Simpson. They found that although 20 years of SIP experiments have generated plenty of … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the …
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JGI Scientists Pen Genome Watch Articles
… Microbiology column last year — and there’s more to come in 2020. Researchers at the U.S. Department of Energy (DOE) Joint … to energy and the environment.” she says. “So, it’s quite a natural fit and a nice complement to the contributions from …
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An Earth Month Look at Sustainability Efforts at the JGI
… program manager for  Sustainable Berkeley Lab (SBL). By 2030, Berkeley Lab  aims to cut its greenhouse gas emissions in half, relative to its 2015 baseline emissions.  Reaching that goal will mean slashing direct emissions from energy, natural gas and electricity, as well as embodied emissions. …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… University of California (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture … For that reason, its genome was sequenced by the JGI in 2009 and it is considered to be a Flagship Plant. By … the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale experiments in …
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