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States, cotton production centers around two varieties: 95 percent of what is grown is known as Upland cotton ( … the simplest cotton genome ( G. raimondii ) several years ago. Studying the cotton genomes provides breeders … lineages had dispersed and diversified over a million years ago, their genomes were “remarkably” stable. “We …

… list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to …

In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation could look like. In one article, … studying virus-host dynamics in nature. In the last few years, mapping the planet’s viral diversity has advanced …

… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant …

… diverse eukaryotic genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which … deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in … microbiome diversity and function.  Nature Microbiol. 7(9):1419-1430. Ye et al (2022) The role of zinc in the …

… by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 to K.A. We …

Olpidium zoospores remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium … to the sequencing effort by the JGI and ZyGoLife in recent years. With the much more extensive taxonomic and genetic … diversification events occurred approximately 650 million years ago, and that the first terrestrial fungi predate the …

… more than once, and these events took place a million years apart: the individual with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a more recent … anticipated with only minor gene loss even after a million years.” Reference genomes for  B. distachyon ,  B. stacei …

… involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North … aquifer in 2007 to achieve this goal. In less than four years, parts of the shallow portions of the groundwater were … remain.  To identify the microbes involved in the early years of the biodegradation process, researchers collected …

… papers, including two Nature Plants publications, in five years, have come out of the JGI-supported project. “The JGI … of the DNA Synthesis Science Program by applying to the year-round Community Science Program Functional Genomics …

… outcome of the innovative research  being proposed by this year’s CSP investigators,” said Tanja Woyke, Deputy Director …

… but we knew the families,” Kyrpides said. Yet, “almost 20 years of metagenomic data and metagenomic analysis, and … of new protein families had started to plateau in recent years, perhaps suggesting that scientists had “captured” … getting more protein families,” Kyrpides said. “In a few years, as we keep on sequencing more metagenomes, some of …