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… of samples for sequencing, or the submission of sequencing data for synthesis – the DOE requires that all work …

By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … visit  energy.gov/science/office-science . … Virophage data on IMG/M data portal …

… or DRI for short.  A kaleidoscope of structure-function data To study DRI experimentally, Blaby-Haas, Grosjean and … Scientists at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — … loses this protein, energy metabolism is disrupted. These data create a multilayered understanding of this Domain …

… is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … Officer Kjiersten Fagnan of the upcoming event. “The tools we use to process and analyze these data are diverse and porting these codes to GPUs present …

… the microbes that play roles in the methane cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the … metagenome assembly, and even an introduction to data analysis using the  IMG/M system . A Comprehensive …

Database provides details on river microbes in 90% of US … Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … The 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements …

… , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome … being monitored and the team plans to continue collecting data to understand the ERD process.  … The work (proposal:  …

Ken leads the development and maintenance of analytical tools and user interface components for the IMG family of …

… that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … and … that was really the foundation for many of the tools that are available these days and that are widely used … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …

… has historically been limited due to the lack of robust tools available for carrying CRISPR into microorganisms. … and its secondary metabolites work could yield new tools for pest control. Secondary metabolites are highly … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …

Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … same route. “It was really amazing how the quality of the data improved thanks to that massive amount of new genomes,” …

D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … energy.gov/science/office-science . … Cotton on Phytozome Data Portal …