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… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US …

… massive problems just as much as it brings about massive data into really interesting ways to look at our systems. … figuring out how to filter out noise from the metabolomics data. We’ve done a lot of work learning about how to use … strain to look at.  And then figuring out how to show this data and to do it in a way that makes sense. And I always …

… joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in … responsible for genome annotation, comparative analysis and data distribution for the JGI's direct collaborators and the …

… high value to establish models and hypotheses, experimental data is critical to further test such hypotheses. In …

… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and Informatics department head. In 2018, Dr. …

… so everybody, readers of the library, can come to our databases and look for the specific information they are … the genomics, with the bioinformatics and with the bigger data, another area I see a great potential will be machine … fungal strains, that will generate a massive amount of data that current technology has never encountered in the …

… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented …

… with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold Sandra Hernandez … and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein …

… include the development of novel computational tools to identify virus sequences, the design of new … host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts … in Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université …

The PhycoCosm data portal allows anyone to freely investigate the genes of … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, …

… for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The class had to … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …

… and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite … important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical chemistry, …