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Natural Prodcast Episode 23: Aaron Puri
… restricted niche. And they do need broad host-range genetic tools so it’s more complicated than working with something … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … And so now that’s what I’m joking about having a lot of data. It’s a lot of metabolomics data sets. So what have we …
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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Nick Everson
… of JGI Operations which include the Safety, Finance, Human Resources, Facilities, IT, Shipping and Receiving, Lab … space and facilities, finance and procurement, human resources, safety, and administrative activities. The Deputy … and acts on behalf of the JGI Director in day-to-day management and planning related to the JGI’s infrastructure …
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A Complex Confection Decoded: Sugarcane Reference Genome
… present in R570 but shows the genomic effects of breeding practices that transformed sugarcane into production … The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for … bioinformatics pipelines and a laboratory information management (LIMS) system. He previously led the NGS Software …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of …
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Supporting Global Research into Actinomycetes
… other related organisms, requires using more specialized tools, skills and protocols,” explained Hiroshi Otani, an … user-available API’s offer a space to not just store data, but for the community to discuss those data and make publicly-visible comments. Its purpose is to …
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Atif Shahab
… platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and enables … Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned …
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Transcriptomic data sets for Novosphingobium aromaticivorans DSM12444 and a ΔSARO_RS14285 mutant grown in the presence of glucose and either protocatechuic, vanillic, syringic, or 4-coumaric acid
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Open Frameworks Training the Next Generation of Scientists
… and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, the course structures center around the practices of collecting samples and the generation and …
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Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
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A perspective: Metatranscriptomics as a tool for the discovery of novel biocatalysts
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