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Frequently Asked Questions: Proposal Submission
… assembled genomes to synthesized DNA constructs to metabolomics data, depending on the specific product types covered … … For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of … the JGI. … No, the proposal is only for sequencing, metabolomics and/or synthesis effort at the JGI. There is no cost …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… much less those considered large and giant. In a recent study  published in the journal  Nature , a team led by … with amoeba or with their hosts, though metagenomics is now making it possible to seek out and characterize … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Viruses Reprogram Cells into Different Virocells
The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic … Researchers have the opportunity to combine the power of genomics and molecular characterization offered at multiple … this project, RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The …
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Forming Scientific Connections and Building Community
C. Villada Project: “ Investigating metabolic network of symbiosis using genome-scale metabolic models ” Pedro …
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Marianne Buscaglia
Marianne is an affiliate researcher who uses metagenomics to study giant viruses in cold marine environments and is …
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How Filamentous Fungi Sense Food
… at the University of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory … of protein-coding genes. This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  … National Academy of Sciences . Researchers applied multiple omics techniques to reconstruct and model the gene …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… more carbon than all other vegetation types in the world combined. Harvesting peat for energy has been increasingly …
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Tomas Tyml
… cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial …
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Effects of Polar Light Cycle on Microbial Food Web
… aligned with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of … period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows that the way … than nearby Antarctic lakes of similar origin. The study was led by Rick Cavicchioli, professor at the …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State University … the chair of the JGI User Executive Committee, on how that study went from the lab to the classroom. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… materials, rumen microbes and their enzymes are an optimal study subject that could lead to more sustainable energy … in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to study microorganisms that can’t be cultured by analyzing and …
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Igor Grigoriev
… protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 fungal genomes in … MycoCosm portal. In 2018, he launched scale-up of algal genomics and PhycoCosm portal. Dr. Grigoriev engaged thousands … Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists.  Nature Genet. …
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