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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and … upstream and downstream, which is how the EPA, it’s one of the indices they use for stream health, they look at …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The … by a virus so that it no longer looks or quacks like one, is it still a duck? For a team led by researchers from … of Allergy and Infectious Diseases (NIAID) award (#1-T32-AI-112542) to CHV.   …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … important cold-water communities of algae with warm-adapted ones, a trend that threatens to destabilize the delicate … to be done is reducing the production of CO2 — this is the first and foremost important thing we need to do.” The study …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is … program and current PhD student, reached this milestone with a recent publication in Molecular Biology and … Lab and beyond. Last summer, Wint hosted a virtual four-day data carpentry workshop for the incoming 2021 JGI-UC …
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Cultivating Symbiotic Antarctic Microbes
… cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … relationships are long-term biological interactions between one or more biological organisms. One hallmark of an … often reduced compared to that of a free-living organism. First discovered in 2011, Nanohaloarchaea are part of the …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … Centralized databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with … included over 2000 RNA Seq libraries. As I previously mentioned, this is an updateable resource. To demonstrate that, …
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … Emiley Eloe-Fadrosh ,  Metagenome Program lead, shone a spotlight on  ammonia oxidizing archaea and what we’re … need to relate to (meta)genomics, and at least one of the papers they reference should be hot off the press. She tells …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support … as a project scientist and then as a research scientist on projects to develop functional genomic technologies and to … Prize studentship Editorial board member for Scientific Reports … Education … Selected Publications … Awards and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … , head of the JGI’s  Microbiome Data Science , leads one project with JGI colleagues Antonio Camargo and Simon …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is … by the NIGMS Biotechnology Training Program (NIH 5 T32 GM008349) at the University of Wisconsin – Madison. This …
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