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The fungus that made itself at home
… to thrive in manmade environments. As reported January 5, 2018 in The ISME Journal , a team led by University of … the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. …
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The JGI Data Portal: Improving User Experience
… Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking to download all the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Tracing the Evolution of Shiitake Mushrooms
… enzymes, oxidoreductases, and cytochrome P450s. This includes the species L. raphanica, which has been … This research was supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of …
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Charting Progress toward Professional Goals
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First Monoploid Reference Sequence of Sugarcane
… a single contiguous region. The JGI sequenced half of the 4,500 BACs sequenced for this project that were colinear to … The final sugarcane sequence generated is 382 Mb; 25,316 protein-coding gene models were predicted with more … draft genome sequence of the polyploid sugarcane variety R570. Among the numerous benefits expected from a genome …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … is interesting because in humans (where it’s called RECQL5), the loss of this protein is associated with cancers. …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
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DAP-seq Drives Robust Mapping of Gene Regulation
… falling. As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — … grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, first … sites for proteins from grasses and trees that diverged 150 million years ago, highlighting the deep evolutionary …
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Computationally Classifying Fungal Lifestyles
… in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  … test, the team reported that the algorithm was over 95% successful at classifying the fungal genomes Support … User Facility, is supported under Contract No. DE-AC02-05CH11231. The work was also supported by the NSF grants  …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science … The study shows that figure is likely closer to a mere 250,000 years — with many key colonization events in the … a variety of new environments.  This all started roughly 250,000 years ago, when eelgrass traveled across the ocean …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… The only requirements are that you stay under the 500-gigabase cap and that you don’t request outside of the … exploratory small proposal that might not max out the whole 500 gigabases? Is it better to try to reach that maximum … can show reviewers the team is really able to take advantage of the data and work with the data. Q: How would you …
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