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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their … said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author on the … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want … don’t have a great way to resolve root respiration from microbial processes, but we’re not mixing the tracer with …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led … DOE human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… polar oceans give rise to some of the largest food webs on Earth. And at their base are microscopic, photosynthetic … important cold-water communities of algae with warm-adapted ones, a trend that threatens to destabilize the delicate … point to this fundamental observation of cold and warm microbial networks, and just how clear and stark the …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… To boost crops more efficiently in the future, the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely on enzymes that have been evolving for billions of years. … Korea as well as a faculty affiliate in the Environmental Genomics and Systems Biology Division of Lawrence Berkeley …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the … the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new … insights into how these ocean photosynthesizers cycle carbon in changing conditions. The products of photosynthesis … what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized hundreds of  …
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2023 Progress Report
… Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, … co-localization of JGI and KBase at the Integrative Genomics Building (IGB). Said Michael Brandt of Ray, “You … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Neha Varghese
… bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. … support for user science and projects through implementation of advanced analysis pipelines and tools as well as development and implementation of microservices in conjunction with the IMG platform. …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology discoveries. (Pictured … Wang, Sravanthi Tejomurthula, Mi Yan, Deanna Beatty)    Vision  Lead AI-driven genomic innovation to advance …
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Tina Clarke
… joined the Lab in 2007 as the Sr. Human Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in … (JGI). Tina serves in an HR advisory role to Division/Area management and supervisors to recommend solutions and appropriate actions on diverse HR related matters. …
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