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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… a special kind of plant metabolism. This metabolism, called crassulacean acid metabolism, or CAM — that’s C-A-M, … plant system, they need to open these pores in their leaves called stomata. And through those pores, water is moved into the atmosphere basically along its concentration gradient. So, the movement of …
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Busting the Unbreakable Lignin
… energy: Cellulose, hemicellulose and lignin, cumulatively called lignocellulose, are the primary components of hardy … glucose. It’s that third component, lignin, that has historically been less of a resource to be extracted and more of an … using magnetic fields to diagnose electronic structure and functionality on the atomic level, was generated at JBEI and …
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VEGA Symposium
… Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) symposium will take place … the goal of this symposium is to bring together a “Viral Ecogenomics” community to foster discussion on how to best … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… so thoroughly that they lyse the cell — a process called lytic infection. But some viruses are also able to play a long game. In a lifestyle called lysogeny, they can insinuate themselves inside the … virus in 34 hosts or 26 percent of the single cells. Metagenomics sequencing then allowed the team to ask, for the 34 …
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A User-Centered Approach to Accessing JGI Data
… request a download.  When we have a calculation for automatically determining which datasets are unrestricted and which … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… that’s just a little west of Fort Collins, near a city called Leadville. ED:   And, uh, Leadville is interesting. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… in the journal Science. It detailed how they’d used metagenomics — a then-novel approach which allows scientists to … of small DNA fragments into larger and coherent pieces called contigs — into genes and even into genomes — from … environment and transfer that ability into industry, specifically to generate biofuels,” Hess said.  (Only 90 of those …
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The JGI Data Portal: Improving User Experience
… It includes several user-validated features and updated functionality, such as: The ability to select data by type … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Cultivating Symbiotic Antarctic Microbes
… lifestyles found in the Antarctic lakes and offers a genetically-tractable model system that could help researchers …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… recently created a computational pipeline that scans specifically for RNA virus sequences, initially using it to comb … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
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2023 Progress Report
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