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Kjiersten Fagnan
… winning team at the Supercomputing conference, SC’18, led by researchers at Oak Ridge National Laboratory. Dr. Fagnan … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… plants and microbes, Trent Northen’s group at Berkeley Lab created a fabricated ecosystem – an EcoFAB. These small …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
Over the last 40 years, summer sea ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. … sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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You Can Move, But You Can’t Hide
… gene content and their genetic sequences. The software was created by researchers under the direction of Microbiome Data … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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Green Algae Reveal One mRNA Encodes Many Proteins
… species of algae and kept seeing what looked like mistakes by the gene prediction algorithms. I decided to dig in a … Laboratory, the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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JGIota: Looking Back at Methane-Making Microbes
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Busting the Unbreakable Lignin
… with little exception, organisms have figured out how to create enzymes that break these components down into … to any type of lignin breakdown — and lignin breakdown by anaerobic fungi therefore thought to be impossible.  And … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at …
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JGI-UC Merced Interns Share Their 2021 Experiences
… the Line Between Plasmids and Phages … Polymorphisms Created by Transposable Elements … Evolution of the Mitochondria … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… scientists to study microorganisms that can’t be cultured by analyzing and then extrapolating data obtained from … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has …
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IMA genome-F18
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… and I look forward to keeping them in my network.      Byline: Ashleigh Papp …
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