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JGI on the 2021 Highly Cited Researchers List
… team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an …
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2025 Progress Report
… Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, …
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Trent Northen
… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic … organizes conference sessions, and serves on review panels. At Berkeley Lab he serves on a number of committees …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … The transcriptomes edit out these distractions. Combining genome and transcriptome information allowed the team to … team worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … oil plume from Deepwater Horizon oil spill led to a draft genome of the first deep-sea, oil-eating bacterium from a … researchers sequenced and assembled the first complete genome of an uncultured symbiont. The single cell was …
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JGI@25: Building a Better Bean
… of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … The team sequenced and assembled a 473-million basepair genome of the common bean, identifying genes related to … across many different labs to be able to sequence a genome.” Since the paper was published in 2014, it has been …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … majors at CSU-San Marcos. That course has since expanded into three other universities. You can learn more … how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has …
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Graduate Students Get Thesis Research Opportunity at the JGI
… composition and metabolism, work on which she will expand with her study of microbes in California’s manmade … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … complete sex chromosomes. The results were published in  Genome Biology . The team found that the shrub willow’s W … in particular: a cytokinin response regulator that was expanded in a palindrome and shown to be undergoing gene …
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An Earth Month Look at Sustainability Efforts at the JGI
… The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Streamlining Regulon Identification in Bacteria
… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … functions are needed. Data yielded through RIViT-seq expand the known transcriptional regulatory network in …
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