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IMA genome-F18
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Nick Everson
… Resources, Facilities, IT, Shipping and Receiving, Lab Automation, and Administration departments. He previously served as JGI’s Business Manager from 2007 to 2012, overseeing all financial and logistics activities.  He returned to the Joint Genome Institute after serving as the Chief Operating …
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The Big Deal About Short Plants
… “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected …
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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
… Pictured from left: [Top row]: Romy Chakraborty, Dawn Chiniquy, Anne Glaesener, …   A total of 20 proposals were selected by the Joint Genome Institute (JGI) and the Molecular Foundry (TMF) for … involving critical minerals and materials. The Joint Genome Institute and Molecular Foundry are DOE Office of …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Computing Sciences site. Lawrence Berkeley National Laboratory (Berkeley Lab), the National Energy Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network … award recognized the release of MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of …
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Mining Metagenomes for Cas Proteins
… possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced by the JGI, we seek to inspire more students to enter the science, technology, …
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JGIota: The Algae Nicknamed ‘Chlamy’
… alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha … why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other organisms – …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to our ability to offer …
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Rex Malmstrom
… bacterial group in the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he … amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, … genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance … and enable biotechnology discoveries. (Pictured from left to right: Peng Wang, Sravanthi Tejomurthula, Mi Yan, Deanna … Biological and Environmental Research program, the Joint Genome Institute provides advanced genomic capabilities, …
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