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… and fungi run the gamut from mutually beneficial to antagonistic. In fungi, 5mC is often found in transposable … poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of producing at …

… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this study. “We’re simply getting much …

… sources of natural products, and have potential as biofuel feedstocks. Understanding the genetic underpinnings … including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …

… by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … researchers surveyed publicly available data in the JGI’s  IMG/M database , information the Probst lab used to search … a targeted technique called virusFISH. Using fluorescently tagged probes, the team was able to visualize the behavior …

… plans to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of …

… , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense collection of publicly accessible metagenomic datasets from a wide variety of ecosystems around … is here .) Working with the JGI, Banfield is a pioneer in metagenomic studies, recovering microbial genomes from biofilm …

… including collecting and analyzing the honey bee gut metagenome, which was done with the help of the US Department …

… more advanced in my understandings than I would be at this stage without the internship and mentorship that followed. I …

… sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is …

… plan for data utilization are clear. Contact JGI staff for feedback before submitting a proposal. Describe in detail … can show reviewers the team is really able to take advantage of the data and work with the data. Q: How would you …