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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … in the Florida Everglades to help train the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second …
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What Happens Underground Influences Global Nutrient Cycles
… for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user facilities—the  … (JGI)—have selected 11 proposals for support from 53 received through a joint research call. Submitted … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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2025 NeLLi Symposium
…   Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of … Symposium will take place at The Marjorie Barrick Museum of Art at the University of Nevada, Las Vegas. The poster …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … data sets, their work may be akin to finding a single snowflake on a colored-in page of that book. Published online … The team used all the publicly available metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and only, version of Phytozome … as the database, and choose the genome you’re after as the dataset. From the (new and improved JGI Data Portal).  Go …
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data … the files) We are currently limited to: Public data: datasets associated with completed projects that are … we have a calculation for automatically determining which datasets are unrestricted and which are not, we will be able …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and biogeochemistry. This is a … the potential to create new EcoGroups – reach out to us. 3.  Q: Can you use NCBI taxonomy information to search your …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives during … at the DOE Joint Genome Institute in 2004. The main object of her research was the symbiont community of a gutless … is the Microbial Science Program Head as well as our Deputy of User Programs. Click to learn more about the program's …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a dizzying array of combinations, are unremarkable, save perhaps for the … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent …
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Training the Next Generation of Talent
… DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of … which is best for the task at hand. “There are at least 30-40 programs and it is not clear which are the best to …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … The more the better. We want to put at least a microgram of DNA in the tube so you’d need at least 2 micrograms in … our turnaround time has been impacted by the pandemic. 3. Q: What instrument / method does the JGI use to …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for … function. He was one of the eight JGI researchers on the 2023 Highly Cited Researchers list, and has appeared on the …
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