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Whole Community Metatranscriptomes and Lipidomes Reveal Diverse Responses Among Antarctic Phytoplankton to Changing Ice Conditions
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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A Community Resource for Secondary Metabolite Researchers
… user engagement. The Science In addition to the core set of "primary metabolites"—chemical compounds shared by most … growth and reproduction—most organisms produce a set of "secondary metabolites," chemical compounds that often … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … its impacts at Berkeley Lab and beyond. Last summer, Wint hosted a virtual four-day data carpentry workshop for the …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal microbe. Understanding how …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … of background. My name is Dan Udwary. I – as well as my co-host, Alison Takemura, whose voice you’ll hear in a minute – … But here, in this first episode you’ll meet me, and my co-host, Alison. We’ll tell you some stories about natural …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the continental United States. They …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Though visible to the naked eye, microscopy reveals unexpected complexity At first glance, the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … that has a membrane,” Volland said. “And this is very unexpected for a bacterium.” Strange Encounters in the …
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JGI on the 2021 Highly Cited Researchers List
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last decade.” … talk about their experiences at the JGI.) Igor Grigoriev hosted two JGI Engagement Webinars promoting the JGI fungal …
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A User-Centered Approach to Accessing JGI Data
… through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… genome discoveries. Unlocking the intricate details of life’s genetic blueprint has long been a significant … life adapted to extreme conditions studied through the Antarctic Lake project. The model’s training also included … AI models. I hope that the JGI will eventually not only host data, but also host these models — while helping its …
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