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… feedstock development due to its ability to grow incredibly fast. They can also be hybridized to produce desirable traits.  Partly enabled by the JGI  Community Science Program New Investigator … to the control poplar plants. The knockout plants also grew faster and had increased production of immunity-boosting …

… While are still working on finalizing the tree and related publication the tree is still in development and not … Q: Is there any possibility to search for genes/proteins by their commonly used names in publications? e.g. erg-1 … for a short demo). 23.  Q: Is there a good way to download fasta files of a bunch of genes? A: Specific genes from a …

… access to the wealth of public microbiome sequence data and enables the user to analyze these data with existing …

… issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA … through its DNA Synthesis Science Program , the JGI enables large-scale synthesis support, sequencing, … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …

… of the National Academy of Sciences bridges this gap, by tracing the evolution of a specific enzyme family called … together to create the robust network to supply amino acids fast enough for life to grow,” Yoshikuni said. To gain this … a phylogenetic tree using bioinformatic software called FastTree and identified 62 distinct AT groups. However, no …

… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates … to the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his …

… core set of "primary metabolites"—chemical compounds shared by most living creatures for energy, growth and … their environment. Many secondary metabolites are produced by groups of genes known as biosynthetic gene clusters … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …

… format for chemical synthesis in the absence of cell growth by isolating the soluble components of lysed cells. By separating the production of enzymes (during growth) and … production process (in cell-free reactions), this framework enables biosynthesis of diverse chemical products at …

… as carbon, nitrogen and sulfur are themselves regulated by viruses in their environments. Environmental DNA … into the host genome, these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and accurate tools for researchers to assess the …

… to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( Populus … to a sustainable bioeconomy. Summary The 27 samples studied by researchers came from two environments: natural forests and plantations managed through human intervention. By leveraging metagenomics, scientists were able to analyze …

… 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. Last year, the … through the assembler MetaHipMer2. The computing program enables a more detailed read of the massive Lake Mendota …

… at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for … to identify specific attributes — such as heat resistance, fast growth rates, and an ability to metabolize burned … The team’s research at both the JGI and EMSL was enabled by the Facilities Integrating Collaborations for User …