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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis … models, Miscanthus has a large and complex genome whose evolutionary history and perennial lifecycle makes it …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … challenges by using  in vitro -expressed TFs and fragmented genomic DNA, eliminating the need for living cells. This … Berkeley National Laboratory, is committed to advancing genomics in support of DOE Office of Science Biological and …
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Webinar: MycoCosm Tutorial
… are built based on what is known about the organism’s ecology, mostly based on literature and user community … While are still working on finalizing the tree and related publication the tree is still in development and not … Q: Has there been any interest in using JBrowse / JB2  for genomic views ( e.g.,: …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could provide more insights … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Flooding and ecological restoration promote wetland microbial communities and soil functions on former cranberry farmland
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Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China
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Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche.
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Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … which they have applied and refined in the sequencing and evolutionary analysis of over fifty plant and animal …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … genomes allowed researchers to study the conservation and evolution of the genes responsible for terpene synthase … desirable from a biofuels production perspective. By using genomic database alignment tools, researchers searched for …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint … Area are also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide …
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The octopus genome and the evolution of cephalopod neural and morphological novelties
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