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JGI at the AGU Fall Meeting
… This year the AGU Fall Meeting, with the theme “Science is … Register for the meeting here. Here are some sessions of interest (all times in PST unless otherwise noted): … Joseph Roscioli, Aerodyne Research Inc.: “Subsurface measurements of nitrogen dynamics in agricultural soil” 4pm …
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Ben Bowen
… Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and … BS – University of Arkansas, Fayetteville, Chemical Engineering Ph. D. – … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … then co-culturing isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop … discoverability and accessibility are critical requirements for amplifying the JGI’s impact. Data generated from a … for technical help, feedback or a guided walk-through of the new Data Portal.  …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons … his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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A Complex Confection Decoded: Sugarcane Reference Genome
… Sugarcane was the last major crop without a reference quality … world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and … conducted by the USA Department of Energy (DOE) Joint Genome Institute …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes assimilating labeled compounds. During this …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against … corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that maize … revealed that just a handful of enzymes are needed to transform zealexins and related precursors into a bonanza of …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and … Arkin, AP, et al. KBase: The United States Department of Energy Systems Biology Knowledgebase. Nature …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial Genomes & …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … recent studies now suggest the gene cluster predates this microbial group. Recently published in the Proceedings of …
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Four Researchers Join JGI User Executive Committee
… Four researchers have been elected to the User Executive Committee of the Joint Genome Institute, a Department of Energy user … biodiversity, ecology, and evolution, with a focus on microbiome sciences and fungal symbioses. He has worked …
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