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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering plants and animals, fungi lack gene body … US Department of Energy under contract no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … end uses and conditions.  The JGI’s sequencing produced the 33 reference genomes to build this pangenome, including a … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis techniques to explore the vast … The Microbial Program focuses on using advanced sequencing technologies to explore microbial diversity — with an … Diversification of the microbial product catalog : Beyond minimal draft and improved draft microbial genomes the …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample … her thoughts about the experience below. In the summer of 2018, Jonathan Benskin was preparing to teach a second year … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
… As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through early introduction to the resources and disciplines advanced …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint … genomics and lab informatics. Prior to joining JGI in late 2025, he served as Director of Scientific Computing at … in his career, he was a core software engineer on the early KBase team at Lawrence Berkeley National Laboratory. …
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Tina Clarke
… Ms. Clarke joined the Lab in 2007 as the Sr. Human Resources Division Partner for the … her BA degree in Psychology from Sonoma State University. Early on, Ms. Clarke knew the importance of understanding … –  present Sr. Compensation Analyst, May 2015 –  present Joint Genome Institute (JGI) HR Partner, June 2017 – present …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, … Notices Data Portal files will be inaccessible July 22–July 24 for computing upgrades . We regret any …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … like Minnesota for example, despite taking up only about 3% of the planet’s landmass, peat moss and their subsurface … fine tune his approach. “I got a lot of that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated DSMZ … 824 new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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JGI@25: Solving the Mystery of the Missing Oil
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … of the Deepwater Horizon oil rig explosion that dumped nearly five million barrels of light crude oil spilling into … different fractions of the oil. Hazen described the early efforts in his keynote talk at JGI’s 2011 Annual …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … JGI Microbiome Data Science Group led by Kyrpides. Since early 2020, people all over the world have been forced to confront … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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