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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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JGI@25: Studying Sorghum’s Survival Skills
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research … and synthesis work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary … group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene … … PhD in Chemistry, Johns Hopkins University (2003) MS in Chemistry, Johns Hopkins University (2000) BS in … (1996) … List available on Google Scholar … Education … Publications …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in microbes, … technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her research … data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner A, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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Benjamin Cole
Dr. Cole is interested in studying how plants interact with their environment. Prior to joining the … (scRNA-seq, Spatial Transcriptomics). … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … of Cell Identity as an R package … Education … Selected Publications … Software …
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Zhong Wang
Research in the Analysis R&D group focuses on developing new … and enabling data-driven science. This is a group of computational biologists, bioinformaticians, computer … the Wang group has developed customized data analyses and software to enable “grand-scale” scientific projects. These … metagenome binning software … Education … Selected Publications … Software …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science … of citramalate., Metabolic Engineering Communications , 2023 Wu et al. Structural characterization of a soil viral … … DNA Synthesis Science Program … Education … Selected Publications … Awards and Honors …
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