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Phylogenomically Guided Identification of Industrially Relevant GH1 β‑Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry
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Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … has been impacted by the pandemic. 3. Q: What instrument / method does the JGI use to pre-screen DNA for enrichment? …
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Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my …
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Synthetic Biology Informatics Group
… Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that … for assembly by Gibson, Yeast recombination and Golden Gate methods SynTrack and associated tools, which track samples … For further details, please reach out to the Group Lead …
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A Sorghum Pangenome Opens More Doors to Discovery
… Leveraging decades of technological development, dozens of … work was enabled by developments in sequencing and analysis methods within the JGI’s plant program. By producing more … Development (USAID) also supported the work.   Publication:  Morris, G.P., Harder, A.M., Healey, A.L.  et …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  For the past 13 …
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Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
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Axel Visel
… Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … applied novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape of …
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant components … of naturally modifying lignin.  The Impact Traditional methods for breaking down biomass use aerobic methods (those … wondering if perhaps the accepted narrative wasn’t quite accurate, and maybe anaerobic fungi living in soils or the …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Novel archaeal lineage found in Yellowstone may have been … early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … archaeal lineages, the team relied on a combination of phylogenomic analyses, transcriptomics for microbial genomic …
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