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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on …
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The endosymbiotic box of protective tricks
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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the … (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. … Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Change’ (SPP 2237), and grant 410739858 in the frame of the project CharMod to K.v.S., as well as RE 1697/16-1 (CharMod) …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact … structures that enable organisms to swim around. However, genome and metagenomic sequencing conducted by the U.S. … was done under Contract DE-AC52-07NA2734. Funding for this project was provided by the U.S. National Science Foundation …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov.
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