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DAP-seq Drives Robust Mapping of Gene Regulation
… As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — experimental … by these approaches creates a vast resource offering researchers the ability to chart regulatory networks across … said Sharon Greenblum, a co-first author on the paper and computational biologist at the JGI. “We had to work really …
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Crysten Blaby-Haas
… between JGI and the Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. … Merchant at UCLA as a NIH Ruth L. Kirschstein National Research Service Award (NRSA) Individual Postdoctoral … involved in metal homeostasis. She began her independent research career at Brookhaven National Laboratory (2015) …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… range. But at what cost?  A collaborative team led by researchers at the University of Texas (UT) at Austin, the … at what cost? In the following guest piece, postdoctoral researcher Joseph Napier from the Juenger lab and computational biologist Paul Grabowski of HudsonAlpha …
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Trent Northen
… Northen has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the Joint BioEnergy Institute … metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes …
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VEGA Symposium
… symposium represents a unique opportunity for students and researchers in the viral ecogenomics field to exchange ideas … Joanne Emerson (UC Davis) Kris Locken (Zymo Research Corp) Vivek Mutalik (LBNL) Peter Weigele (New …
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A Collaboration to Improve Plant Genome Annotations Across Species
… As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than … few species like Arabidopsis or rice as homology models for computational function predictions and also due to the …
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Integrating Experimentation with Data
… national scientific user facilities dedicated to advancing research in bioenergy and environmental science. They … a collaborative, peer-reviewed proposal process—enabling researchers worldwide to explore complex biological and … are supported by the DOE's Biological and Environmental Research (BER) program.   …
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DAS Tool for Genome Reconstruction from Metagenomes
… JGI’s Emerging Technologies Opportunity Program (ETOP) , researchers have developed and improved upon a tool that … cycling to plant health and growth. Developing a scalable computational approach that provides researchers with the ability to recover and reconstruct …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… of genomics, structural biology, bioimaging, and water research. The meeting involved key representatives from the ACTIVE SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University of Duisburg-Essen, the … DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a … group through the  DOE Office of Science Graduate Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane …
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Atif Shahab
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. … sequencing, integrative -omics, and data mining, empowering research collaborators to take on ambitious synthetic … to interrogate the roles that terpenes play in nature. The research collaboration has been incredibly productive; more …
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