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Ravikumar Patel, Guy Polturak, Marlis Reich, Taniya RoyChowdhury and Mar Schmidt; [bottom] Cody Spiegel, James Tan, … Emma Timmins-Schiffman, Andressa M. Venturini, Valentin Waschulin, Flavia Winck Vischi, Jennifer Wisecaver, Yaqi You, Yong Zhang and …

The JGI is eager to work and share our tools with a widening circle of researchers. That’s why each year we look …

… subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … … About the JGI Chief Informatics Officer … Selected Publications … Awards and Honors …

… (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … 11% of the five-year milestones. … Highlights arising from scientific collaborations with our users over the last year …

… on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He holds joint … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast … Berkeley Laboratory Director’s Award for Exceptional Scientific Achievement 2017-  Adjunct Professor UC-Berkeley …

Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, …

Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A … approach to reconstruct and model gene regulatory pathways used by the filamentous fungus  Neurospora crassa, and to identify and decide on the order in which this fungus breaks down plant cell wall materials …

This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National … of data with MetaHipMer2. And the National Energy Research Scientific Computing (NERSC) has another supercomputer, …

Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic … through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  … work also used resources of the National Energy Research Scientific Computing Center (NERSC) , which is supported by …