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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more … of metagenome-assembled viral genomes . The Impact The microbes that play key roles in cycling nutrients such as …
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Busting the Unbreakable Lignin
… of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a plant … skeleton. It’s more complex, and poisons enzymes and the  microbes that make them. It’s known that aerobic fungi, like …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying … on thiolases, a superfamily of enzymes found only in microbes, which make carbon-carbon bonds. This ability is …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
Journal publication caps JGI pilot project with fledgling Florida high school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer through the waters … Everglades in Palm Beach County, and particularly about the microbes that play roles in the methane cycle. Their data …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny ocean-dwellers …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from … relative of the oak. These fungi are part of the genus Lentinula, which have evolved to decompose hardwoods on every …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly … advantage of their joint metabolisms. Because, together, microbes can be used to create compounds more efficiently …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth … 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San Francisco Bay Area counties. The JGI, located at …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome …
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Natural Prodcast Episode 3: The Primer, Part 3
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … will help solve energy and environmental challenges.   Scanning the California oak woodlands from the air, large swaths …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a …
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