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Enlarging Windows into Understanding Gene Functions
… Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that … factors bind in the genome. A key aspect of the project is understanding what TFs and regulatory networks … “DAP-Seq is the main source of information in the project,” Nagy added. “Since the FUNCODE is primarily …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… enough experience to make really good contributions to the project. Also my area of expertise over the past couple … I think that my skills were very complimentary to the project and I learned a lot and gonna take a lot away from … of the internships I’ve been a part of were only about the project, but JGI truly invested in me to help me become a …
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A User-Centered Approach to Accessing JGI Data
… limited to: Public data: datasets associated with completed projects that are eligible for public release, have … For IMG & Mycocosm: Data that is associated with an ITS project ID (AP or SP) Q: What JGI Data Policy considerations …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Berkeley National Laboratory (Berkeley Lab), led the project. He explained that large language models—artificial … environments, the long-term ecological Harvard Forest project, large datasets from soil microbiome studies … to extreme conditions studied through the Antarctic Lake project. The model’s training also included early access to …
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You Can Move, But You Can’t Hide
… used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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JGI@25: Roots of a Mutualist Relationship
… many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … 2019, recalled Uri Neri of Tel Aviv University, one of the project co-leads and first author of the study. Members of … Neri said. “Our team grew and so did the scope of the project.” To this end, Kyrpides emphasized, the …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… shared their thoughts on the students’ efforts. Ben Cole, a project scientist in Visel’s Genomics of Plant-Microbial … Responses Under Climatic and Environmental Change (SPRUCE) project Melanie LeGro (2016 graduate intern): Currently … science communication and education organization The Biota Project (http://thebiotaproject.org/) and is involved with …
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Viruses Reprogram Cells into Different Virocells
… and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics …
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Pinning Down a Piece of Photosynthesis
… — but the experts we were able to work with on this project to ask questions about structure and function,” … work well for  in vitro  and  in vivo experiments.  In a project led by Blaby, through what is now the  Community … of encoded proteins at high throughput. “The JGI synthesis project was the spark that started it all,” Blaby-Haas said. …
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Improving the Cacao Genome and Phytozome
… Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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Access to Rock Star Scientists
… by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. … to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC Merced JGI Mentor: Albert …
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