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EnZymClass: Substrate specificity prediction tool of plant acyl-ACP thioesterases based on ensemble learning
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Development of genetic tools for heterologous protein expression in a pentose‐utilizing environmental isolate of Pseudomonas putida
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gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes
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Uncovering Novel Genomes from Earth’s Microbiomes
… methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really stand out … Adding Value Beyond Genome Sequences Much of the data had been generated from environmental samples  …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … RNA to understand gene expression, and developed new tools to map that soil RNA to fungal genomes.  The U.S. … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … to link experimental evidence across species. Centralized databases with large-scale transcriptome projects such as … on the usage of this resource. There are two different portals where this data is currently hosted. The first one …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the … genome of Setaria viridis is available on JGI’s plant portal Phytozome .  Researchers from the RIKEN Center for …
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Operating Expenses
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Informatics Advisory Committee
… effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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Automated group assignment in large phylogenetic trees using GRUNT: GRouping, Ungrouping, Naming Tool
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Connecting metabolome and phenotype: recent advances in functional metabolomics tools for the identification of bioactive natural products
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