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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … viral genomics resources such as analytical tools and data repositories to two projects funded through the …
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A Complex Confection Decoded: Sugarcane Reference Genome
The reference genome of R570 is available on the JGI plant data portal,  Phytozome .   … The work (proposal: …
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Partnerships Development Team
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2024 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … number of users with a record output of products, making data easier to access and use, and by investing in the …
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Natural Prodcast Episode 6: Marc Chevrette
… and I’m really excited about it. Because now we have the tools through genomics, and metabolomics, to ask these … for a company. Personally, that was my first taste of big data if you want, maybe it’s medium data now. But at the time, it was big data. And yeah, trying …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … community with advanced genomic capabilities, large scale data, and professional expertise while responsibly managing … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… of their well-designed sampling and analysis of their data at the time. Following the publication of their paper … Canada at Summerland BC aimed to generate whole genome data of Olpidium. This required an enormous amount of effort … genome and transcriptome data were generated, bioinformatic tools for binning metagenome data involved with mainly …
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Neha Varghese
… analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for … through implementation of advanced analysis pipelines and tools as well as development and implementation of …
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Dispatches From JGI Interns
… describe their deep dives into genomics, computational tools, and big data.  …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… type-strain deposits. All of these genome sequences and the tools to compare them are available on the JGI’s Integrated … gene loss shape the BGC repertoire in most genomes. The BGC data will also soon be contained within the JGI’s Secondary … various bioinformatic tools and comprehensive curated databases, including nomenclatural and genomic information …
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