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The More the Merrier: Making the Case for Plant Pan-genomes
… the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from … increase fruit and flower size, and confer stress tolerance traits. Given the importance of polyploidy in plants, …
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Disclaimer
NOTICE Information from this server resides on a computer system funded by the … Department of Energy. Anyone using this system consents to monitoring of this use by system or security personnel. … With respect to documents available from this server, neither the United States Government nor …
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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits
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Understanding Wildfire Recovery, Starting in Soil
… return to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By … DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, bacteria and viruses survive. … team of researchers collected soil samples from a wildfire that burned at the Colorado-Wyoming border, …
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Crops as Tough as World Cup Turf
… our warming world, we’ll need corn, sorghum and other crops to grow well in worse conditions: with more heat, less water … Guangchao Sun and Vladimir Torrres have looked into traits that could transfer from grasses into other crops.  One grass they studied just …
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Extreme Scale De Novo Metagenome Assembly
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, scientists have … virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the …
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Toward More Efficient Artificial Photosynthesis
… system. The Impact Photosynthesis harnesses carbon captured from the atmosphere in a process that generates energy. The … them to test composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director … was enabled in part through the Community Science Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome …
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Metagenomes from Arctic Soil Microbial Communities from the Barrow Environmental Observatory, Utqiaġvik, AK, USA
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A Natural Mechanism Can Turbocharge Viral Evolution
The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … and viral genomes, as well as genomes sampled all at once from the same environment, called metagenomes. Why? Simon … DE-AC02-05CH11231 through the Community Science Program (CSP), the G. Unger Vetlesen and Ambrose Monell Foundations, …
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Computationally Classifying Fungal Lifestyles
… class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …
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