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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
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Matt Blow
… Dr. Blow joined the JGI in 2009, and currently heads the Genome Analysis group. In this role he supervises the Genome Assembly, QA/QC, and … BS in Biochemistry and Biological Chemistry, Nottingham University, UK PhD in Genomics, University of … regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root Bacteria Release Plant-Available …
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide … This work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI … to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. … the Biophysics program. (Graduated from UC Merced in Spring 2019.) Mentor: Ben Cole, Genomics of Plant-Microbial …
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Genome sequence of the Trifolium rueppellianum - nodulating Rhizobium leguminosarum bv. trifolii strain WSM2012
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JGI Accepts 17 Proposals for Community Science Program
… Monitoring Inter-Organism Interactions Within Ecosystems Latest … been approved through the annual Community Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint … evolved from a white paper approved through JGI’s CSP New Investigator call to a full-scale submission. She …
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Rex Malmstrom
… and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in … mycorrhizal fungi. Microbiome 199 Needham, D.M. et al. 2019. A distinct lineage of giant viruses brings a rhodopsin …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility located at …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | … The new genome assembly resolves both haplotypes, meaning it separately represents the sets of chromosomes …
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University … the natural product galaxy. J Ind Microbiol Biotechnol. 2019 Mar;46(3-4):273-279.   Otani, H., Stogios, P.J, Xu, X., …
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Waiting to Respire
… development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria did; contemporaries Melainabacteria and Sericytochromatia, members of the same clade … to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined …
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