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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Massie S. Ballon
… S. Ballon is the Communications and Outreach Manager at the JGI. Through multi-platform stories and outreach efforts, … the team aims to broaden awareness of and access to JGI public resources and the DOE mission, as well as help … Ballon is a molecular biology-trained science communicator with extensive experience shaping compelling narratives for …
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Waiting to Respire
… of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed … from marine samples. The research teams opted to collaborate on a single study, with Matheus Carnevali and …
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Natural Prodcast Episode 17: Cassandra Quave
… week is Professor Cassandra Quave from Emory University, with joint appointments in the School of Medicine and … people aspects of things, because a lot of what we do at JGI in terms of the sequencing that we do is very … virus testing. So having that ability and willingness to collaborate across disciplines can’t be underestimated as …
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Comparative Transcriptome Analysis of Methylibium petroleiphilum PM1 Exposed to the Fuel Oxygenates Methyl tert-Butyl Ether and Ethanol▿ †
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, … In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a focus on adapting JGI workloads to run on … Kjiersten Fagnan is the JGI's Chief Informatics Officer. Click to learn more about …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … and technical writing while also making new connections with both researchers and other interns. At the end of the … performance computing and had an amazing opportunity to collaborate and network with talented scientists and staff …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … Microbiome Data Collaborative (NMDC). Prospective users with questions on how to partner with the Metagenome Science Program on their research are … Eloe-Fadrosh is the Metagenome Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … on the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … https://phycocosm.jgi.doe.gov/oomycota ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance … genome function, particularly those not readily achievable without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at …
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Making a Lichen Together
… Photobiont and fungus (mycobiont) live intertwined, with the photobiont transferring part of its … . To explore the genomes, Armaleo and colleagues worked with Igor Grigoriev, the Fungal & Algal Program lead at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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