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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint … to carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for …
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Webinar: Introducing the BioSANS capability
… (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a …
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Virus Discoveries that Keep Getting Bigger
… large virions (700 nm in diameter) to much smaller virions (120 nm in diameter). Across the phylum  Nucleocytoviricota , … of Science User Facility, under contract no. DE-AC02–05CH11231. C.A. received funding from the European Research …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human Genome Center … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence … The DNA sequence and biology of human chromosome 19 The DNA sequence and comparative analysis of human …
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Emiley Eloe-Fadrosh
… Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial ecology and … She stepped into the Metagenome Program Lead position in 2017. She also leads the DOE’s multi-lab National Microbiome … for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. Cohort-based learning for …
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JGI@25: Studying Sorghum’s Survival Skills
… and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple grain eaten … for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have cited that …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two … switchgrass gardens to track crop productivity across 1,100 miles and eight states. In 2021, using switchgrass …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial and complete viral genomes. That study … multiplied the number of known viral genes by a factor of 16. The same year, the JGI expanded its existing Integrated …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 …
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Introducing New Members of the JGI User Executive Committee
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… and efficiently harvest the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the … kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to … that work like assembly lines for efficiency.  In 2021, her team saw that four strains of anaerobic fungi also, …
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